docs: reflect Phase 3 agent SDK integration progress
Update phases.md with Phase 3 checklist (in_progress), add session progress log entry, record claude CLI architecture decision in task_plan.md, update README/TODO/CHANGELOG with Phase 3 additions, and sync .claude/CLAUDE.md with current constraints.
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Terminal with session panel (MobaXterm-style), built with GTK 3 + VTE. Catppuccin Mocha theme.
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> **v2 in progress (Phase 2 complete):** Redesign as a multi-session Claude agent dashboard using Tauri 2.x + Svelte 5 + Claude Agent SDK. Working multi-pane terminal with PTY backend, CSS Grid tiling, and Catppuccin theme on branch `v2-mission-control`. See [docs/task_plan.md](docs/task_plan.md) for architecture and [docs/phases.md](docs/phases.md) for implementation plan.
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> **v2 in progress (Phase 3 in progress):** Redesign as a multi-session Claude agent dashboard using Tauri 2.x + Svelte 5. Working multi-pane terminal with PTY backend, agent panes with structured output from `claude` CLI, CSS Grid tiling, and Catppuccin theme on branch `v2-mission-control`. See [docs/task_plan.md](docs/task_plan.md) for architecture and [docs/phases.md](docs/phases.md) for implementation plan.
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